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	<title>Total Synthesis Blog &#187; acyclic</title>
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	<description>Total Synthesis Blog - Organic Synthesis of Natural Products and related compounds</description>
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		<title>Aplysamine 6</title>
		<link>http://www.totalsynthesis.eu/2008/12/aplysamine-6/</link>
		<comments>http://www.totalsynthesis.eu/2008/12/aplysamine-6/#comments</comments>
		<pubDate>Sun, 14 Dec 2008 13:22:33 +0000</pubDate>
		<dc:creator>Natural Product</dc:creator>
				<category><![CDATA[Articles]]></category>
		<category><![CDATA[acyclic]]></category>
		<category><![CDATA[biological properties]]></category>
		<category><![CDATA[from animals]]></category>
		<category><![CDATA[retrosynthesis]]></category>

		<guid isPermaLink="false">http://www.totalsynthesis.eu/?p=195</guid>
		<description><![CDATA[
This sunday, very simple target molecule &#8211; aplysamine 6 which shows inhibition aganist isopropenylcysteine carboxy methyl transferase (Icmt), which is important in oncogenesis. The structure of aplysamine 6 is drawn below:

Let me add that aplysamine 6 is a natural product (of course) isolated from sponge Pseudoceratina sp.
Well, that&#8217;s not very complex target and the retrosynthesis [...]]]></description>
			<content:encoded><![CDATA[<p><br />
This sunday, very simple target molecule &#8211; aplysamine 6 which shows inhibition aganist isopropenylcysteine carboxy methyl transferase (Icmt), which is important in oncogenesis. The structure of <strong>aplysamine 6</strong> is drawn below:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-structure.gif" rel="lightbox[195]"><img class="aligncenter size-medium wp-image-196" title="Molecular structure of aplysamine 6" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-structure-300x149.gif" alt="" width="300" height="149" /></a></p>
<p>Let me add that <strong>aplysamine 6</strong> is a natural product (of course) isolated from sponge <em>Pseudoceratina </em>sp.</p>
<p>Well, that&#8217;s not very complex target and the retrosynthesis and also total synthesis should be quite easy. My idea to disconnect this stuff is something like that:</p>
<p><span id="more-195"></span><br />
<a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-myretro.gif" rel="lightbox[195]"><img class="aligncenter size-medium wp-image-197" title="My retrosynthesis of aplysamine 6." src="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-myretro-275x300.gif" alt="" width="275" height="300" /></a></p>
<p>Everything should by clear. All starting materials could be prepared from phenole or from commercialy avaiable anisaldehyde.</p>
<p>People who did the synthesis used very simmilar approach, so I didn&#8217;t draw retrosynthesis again. One important difference is use of Perkin condensation instead of something I labeled &#8216;Wittig-like&#8217; reaction <img src='http://www.totalsynthesis.eu/wp-includes/images/smilies/icon_wink.gif' alt=';)' class='wp-smiley' />  Let&#8217;s see how they completed whole total synthesis.</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-1.gif" rel="lightbox[195]"><img class="aligncenter size-medium wp-image-198" title="Total synthesis of aplysamine - part 1." src="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-1-300x112.gif" alt="" width="300" height="112" /></a></p>
<p>As you can see they started with p-anisaldehyde and they brominated it in first step. Ok, reaction is slow (there&#8217;s no Lewis acid), but more interesting is that aldehyde functional group isn&#8217;t oxidizied under such conditions. Coversion <strong>3</strong>-&gt;<strong>4</strong> is of course mentioned Perkin condensation (well, authors wrote that is <a href="http://www.organic-chemistry.org/namedreactions/knoevenagel-condensation.shtm" target="_blank">Doebner-Knovenagel condensation</a>&#8230; ok, probably it is <img src='http://www.totalsynthesis.eu/wp-includes/images/smilies/icon_wink.gif' alt=';)' class='wp-smiley' />  ). Last step in this scheme is conversion of carboxylic acid to corresponding acyl chloride.</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-21.gif" rel="lightbox[195]"><img class="aligncenter size-medium wp-image-200" title="Total synthesis of aplysamine 6 - part 2." src="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-21-300x115.gif" alt="" width="300" height="115" /></a></p>
<p>Now, second building block is prepared. They use <em>p</em>-hydroxy benzyl alcohol (can be obtained from <em>p</em>-anisaldehyde by its reduction) as second precursor. Next substitution oh hydroxyl group is performed to give <strong>7</strong>. It&#8217;s a question why they didn&#8217;t convert -OH to better leaving group such as tosylate and so forth. <strong>7</strong> is reduced on palladium catalyst to amine hydrochloride <strong>8</strong>, which in turn is brominated to <strong>9</strong> (again without any Lewis acid).</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-3.gif" rel="lightbox[195]"><img class="aligncenter size-medium wp-image-201" title="Total synthesis of aplysamine 6 - part 3." src="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-3-300x69.gif" alt="" width="300" height="69" /></a></p>
<p><br />
In next step two building blocks <strong>5</strong> and <strong>9</strong> are coupled and amide <strong>10</strong> is formed. OH group from aromatic ring of <strong>9</strong> isn&#8217;t acylated.</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-4.gif" rel="lightbox[195]"><img class="aligncenter size-medium wp-image-202" title="Total synthesis of aplysamine 6 - part 4." src="http://www.totalsynthesis.eu/wp-content/uploads/2008/12/aplysamine-6-synthesis-4-300x157.gif" alt="" width="300" height="157" /></a></p>
<p><strong>10</strong> is a core of aplysamine 6. In next two steps primary amine moiety is attached to this structural core. This is achived by use of Williamson reaction (ether formation) with 1,3-dibromopropane to form derivative <strong>11</strong>. <strong>11</strong> is converted to aplysamine 6 by well-known Sn2 reaction.</p>
<p>For more pieces of information please see:</p>
<p><a href="http://dx.doi.org/10.1016/j.tetlet.2008.10.103" target="_blank">N. Ullah, K. M. Arafeh, <em>Tetrahedron Lett.</em>, <strong>2009</strong>, 158-160.</a></p>
<p></p>
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		<title>Dideoxypetrosynol A</title>
		<link>http://www.totalsynthesis.eu/2008/09/dideoxypetrosynol-a/</link>
		<comments>http://www.totalsynthesis.eu/2008/09/dideoxypetrosynol-a/#comments</comments>
		<pubDate>Wed, 10 Sep 2008 16:40:50 +0000</pubDate>
		<dc:creator>Natural Product</dc:creator>
				<category><![CDATA[Articles]]></category>
		<category><![CDATA[acyclic]]></category>
		<category><![CDATA[from animals]]></category>
		<category><![CDATA[mechanisms]]></category>
		<category><![CDATA[retrosynthesis]]></category>
		<category><![CDATA[symmetrical]]></category>

		<guid isPermaLink="false">http://www.totalsynthesis.eu/?p=150</guid>
		<description><![CDATA[
Dideoxypetrosynol A is linear, polyacetylenic target molecule which consist 30 carbon atoms. It&#8217;s also C2-symmetric molecule what is important to planning synthesis, of course. Let&#8217;s see structure of dideoxypetrosynol A:

It looks so simple but its spectrum of biological activities is very wide. Dideoxypetrosynol A was isolated from marine sponge (Petrosia sp.) found in Komun islands, [...]]]></description>
			<content:encoded><![CDATA[<p></p>
<p>Dideoxypetrosynol A is linear, polyacetylenic target molecule which consist 30 carbon atoms. It&#8217;s also C<sub>2</sub>-symmetric molecule what is important to planning synthesis, of course. Let&#8217;s see structure of dideoxypetrosynol A:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/dideoxypetrosynol.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-151" title="dideoxypetrosynol" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/dideoxypetrosynol-300x96.gif" alt="" width="300" height="96" /></a></p>
<p>It looks so simple but its spectrum of biological activities is very wide. Dideoxypetrosynol A was isolated from marine sponge (<em>Petrosia sp.</em>) found in Komun islands, Korea. It exhibit anticancer activity aganist ovarian and skin cancer cells. It can also inhibit DNA replication. So, biological properties are interesting but &#8211; unfortunately &#8211; concentration of dideoxypetrosynol in dry natural source is very poor (just about <span style="text-decoration: underline;">23 mg in 14.5 kg dry source</span>). Development of synthesis this target in larger scale is obvious.</p>
<p>There are also some compounds (with interesting biological activity) related to dideoxypetrosynol, for example: duryne <strong>2</strong>, petrosynol <strong>3</strong>:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/related_to_dideoxypetrosynol.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-152" title="related_to_dideoxypetrosynol" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/related_to_dideoxypetrosynol-300x192.gif" alt="" width="300" height="192" /></a></p>
<p>Synthesis of such quite simple compounds shouldn&#8217;t be very complicated&#8230; maybe boring, but in fact &#8211; it&#8217;s not. Just look at retrosynthesis chart:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/retrosynthesis_chart1.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-159" title="retrosynthesis_chart1" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/retrosynthesis_chart1-300x113.gif" alt="" width="300" height="113" /></a></p>
<p><span id="more-150"></span></p>
<p>Benefits from presence of C<sub>2</sub> symmetry axis are clear. Grignard and Wittig key steps are obvious, but what is the &#8216;Oxidative coupling of Wittig reagent&#8217;? Let&#8217;s look at the synthesis to answer this question.</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/dideoxypetrosynol_synthesis_1.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-154" title="dideoxypetrosynol_synthesis_1" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/dideoxypetrosynol_synthesis_1-300x152.gif" alt="" width="300" height="152" /></a><br />
<br />
Synthesis starts with <strong>4</strong>, TBS-protected terminal alkynol, which is deprotonated by butyllithium in first step and reacted with oxirane in the presence of Me3Al as Lewis acid to give diol <strong>5</strong>. Now, free OH group is exchanged to Br and then, by adding triphenylphosphine, phosphonium salt <strong>6</strong> is formed. It&#8217;s quite clear. In next step buthyllithium is added again and in next few hours by acting of oxygen from the atmosphere &#8211; product <strong>7</strong> is forming. It&#8217;s oxidative coupling. Nice reaction.</p>
<p>Next steps are:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/dideoxypetrosynol_synthesis_2.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-155" title="dideoxypetrosynol_synthesis_2" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/dideoxypetrosynol_synthesis_2-300x189.gif" alt="" width="300" height="189" /></a></p>
<p>and they include deprotection and oxidation to form <strong>8</strong>, Wittig olefination to form <strong>9</strong>, and Grignard reagent addition to form racemic dideoxypetrosynol <strong>1</strong>. Well, racemic.</p>
<p>Finally, racemic product was resolved by enzyme lipase AK:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/enzymatic_resolution.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-156" title="enzymatic_resolution" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/enzymatic_resolution-300x123.gif" alt="" width="300" height="123" /></a></p>
<p>There are also one feature in this synthesis: why don&#8217;t they start their synthesis from 1,4-dichlorobut-2-ene and undergo S<sub>N</sub>2 reaction with Grignard reagent derived from corresponding alkyne? Well, actually they wanted to do it in such way but only side products were forming:</p>
<p><a href="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/side_products.gif" rel="lightbox[150]"><img class="aligncenter size-medium wp-image-157" title="side_products" src="http://www.totalsynthesis.eu/wp-content/uploads/2008/09/side_products-300x166.gif" alt="" width="300" height="166" /></a></p>
<p>For more see:</p>
<p><a href="http://dx.doi.org/10.1002/ejoc.200800593" target="_blank">B. W. Gung, A. O. Omollo, <em>Eur. J. Org. Chem</em>, <strong>2008</strong>.</a><br />
</p>
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